Final Multiqc Report
https://github.com/Daylily-Informatics/daylily (BRANCH:* sentb) (TAG:grape-ape.v1) (HASH:d7edfe2f)
- Project/Budget
- da-us-west-2d-giab-sownsamp-test
- Budget @ Runtime
- $0.0 of $200.0 spent ( 0%)
- Spot Instances
- c6i.32xlarge c7i.48xlarge c7i.metal-48xl m7i.metal-48xl
- Spot Costs per hr
- median: $2.97 mean: $2.79 ( avg cost per vcpu,per min: $0.000242214 )
- FQ->BAM.sort avg Costs
- BAM mrkdup avg Cost
- 0 min, costing $0.00
- Results Dir (GB)
- 63G
Report
generated on 2025-05-12, 20:04 UTC
based on data in:
/fsx/analysis_results/ubuntu/ont_ds/daylily/results/day/hg38
Controls Concordance Report
Concordance Stats For The GIAB HC Regions For This Sample.
| mqc_id | SNPClass | Sample | TgtRegionSize | TN | FN | TP | FP | Fscore | Sensitivity-Recall | Specificity | FDR | PPV | Precision | AltId | CmpFootprint | AllVarMeanDP | CovBin | Aligner | SNVCaller |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-All | All | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,515,247,063.0 | 514,177.0 | 3,181,503.0 | 149,628.0 | 0.9 | 0.9 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50 | DEL_50 | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,518,736,212.0 | 85,278.0 | 121,253.0 | 25,980.0 | 0.7 | 0.6 | 1.0 | 0.2 | 0.8 | 0.8 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50 | DEL_gt50 | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,518,942,742.0 | 1.0 | 0.0 | 12.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont | |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-INS_50 | INS_50 | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,518,738,602.0 | 84,679.0 | 119,462.0 | 22,656.0 | 0.7 | 0.6 | 1.0 | 0.2 | 0.8 | 0.8 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50 | INS_gt50 | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,518,942,733.0 | 3.0 | 7.0 | 29.0 | 0.3 | 0.7 | 1.0 | 0.8 | 0.2 | 0.2 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50 | Indel_50 | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,518,923,916.0 | 9,492.0 | 9,335.0 | 826.0 | 0.6 | 0.5 | 1.0 | 0.1 | 0.9 | 0.9 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50 | Indel_gt50 | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,518,942,496.0 | 62.0 | 185.0 | 4.0 | 0.8 | 0.7 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-SNPts | SNPts | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,516,726,506.0 | 222,252.0 | 1,993,985.0 | 68,832.0 | 0.9 | 0.9 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods5x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv | SNPtv | Ods5x_HG006_sup-PAY77227_0 | 2,518,942,743.0 | 2,517,893,057.0 | 112,410.0 | 937,276.0 | 31,289.0 | 0.9 | 0.9 | 1.0 | 0.0 | 1.0 | 1.0 | HG006 | giabHC | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-All | All | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,419,692.0 | 24,676.0 | 418,248.0 | 104,667.0 | 0.9 | 0.9 | 1.0 | 0.2 | 0.8 | 0.8 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50 | DEL_50 | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,837,036.0 | 6,194.0 | 19,386.0 | 16,824.0 | 0.6 | 0.8 | 1.0 | 0.5 | 0.5 | 0.5 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50 | DEL_gt50 | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,862,610.0 | 5.0 | 1.0 | 65.0 | 0.0 | 0.2 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-INS_50 | INS_50 | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,837,055.0 | 6,441.0 | 19,120.0 | 13,025.0 | 0.7 | 0.7 | 1.0 | 0.4 | 0.6 | 0.6 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50 | INS_gt50 | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,862,606.0 | 6.0 | 4.0 | 283.0 | 0.0 | 0.4 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50 | Indel_50 | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,860,146.0 | 781.0 | 1,689.0 | 2,198.0 | 0.5 | 0.7 | 1.0 | 0.6 | 0.4 | 0.4 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50 | Indel_gt50 | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,862,533.0 | 14.0 | 69.0 | 196.0 | 0.4 | 0.8 | 1.0 | 0.7 | 0.3 | 0.3 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-SNPts | SNPts | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,594,796.0 | 7,475.0 | 260,345.0 | 45,243.0 | 0.9 | 1.0 | 1.0 | 0.1 | 0.9 | 0.9 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods10x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv | SNPtv | Ods10x_HG006_sup-PAY77227_0 | 377,862,616.0 | 377,741,222.0 | 3,760.0 | 117,634.0 | 26,833.0 | 0.9 | 1.0 | 1.0 | 0.2 | 0.8 | 0.8 | HG006 | clinvar_genes | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-All | All | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,084,448,522.0 | 125,165.0 | 3,712,714.0 | 1,315,480.0 | 0.8 | 1.0 | 1.0 | 0.3 | 0.7 | 0.7 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-DEL_50 | DEL_50 | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,066,552.0 | 42,089.0 | 177,760.0 | 172,301.0 | 0.6 | 0.8 | 1.0 | 0.5 | 0.5 | 0.5 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-DEL_gt50 | DEL_gt50 | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,286,362.0 | 37.0 | 2.0 | 583.0 | 0.0 | 0.1 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-INS_50 | INS_50 | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,066,564.0 | 45,613.0 | 174,224.0 | 135,131.0 | 0.7 | 0.8 | 1.0 | 0.4 | 0.6 | 0.6 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-INS_gt50 | INS_gt50 | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,286,359.0 | 26.0 | 16.0 | 2,497.0 | 0.0 | 0.4 | 1.0 | 1.0 | 0.0 | 0.0 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-Indel_50 | Indel_50 | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,256,363.0 | 6,482.0 | 23,556.0 | 32,680.0 | 0.5 | 0.8 | 1.0 | 0.6 | 0.4 | 0.4 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-Indel_gt50 | Indel_gt50 | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,088,285,364.0 | 95.0 | 942.0 | 2,199.0 | 0.5 | 0.9 | 1.0 | 0.7 | 0.3 | 0.3 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-SNPts | SNPts | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,086,002,285.0 | 19,938.0 | 2,264,178.0 | 514,709.0 | 0.9 | 1.0 | 1.0 | 0.2 | 0.8 | 0.8 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
| Ods15x_HG006_sup-PAY77227_0-ont-sentdont-SNPtv | SNPtv | Ods15x_HG006_sup-PAY77227_0 | 3,088,286,401.0 | 3,087,203,480.0 | 10,885.0 | 1,072,036.0 | 455,380.0 | 0.8 | 1.0 | 1.0 | 0.3 | 0.7 | 0.7 | HG006 | hg38 | -1.0 | -2.0 | ont | sentdont |
Rules Benchmark Data2
| combined_rule | sample | rule | s | h:m:s | max_rss | max_vms | max_uss | max_pss | io_in | io_out | mean_load | cpu_time | hostname | ip | nproc | cpu_efficiency | instance_type | region_az | spot_cost | snakemake_threads | task_cost | rule_prefix | rule_suffix |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ont.sentdont.1-24-Ods5x_HG006_sup-PAY77227_0. | Ods5x_HG006_sup-PAY77227_0. | ont.sentdont.1-24 | 3,990.5 | 1:06:30 | 38,996.0 | 50,226.1 | 38,969.0 | 38,972.8 | 19,382.1 | 13,408.2 | 18,343.8 | 672,821.9 | i192-dy-all-3 | 10.0.1.102 | 192.0 | 168.6 | c7i.48xlarge | us-west-2d | 3.0 | 192.0 | 3.3 | ont | sentdont.1-24 |
| ont.sentdont.1-24-Ods10x_HG006_sup-PAY77227_0. | Ods10x_HG006_sup-PAY77227_0. | ont.sentdont.1-24 | 2,391.1 | 0:39:51 | 39,000.3 | 50,223.1 | 39,087.4 | 39,092.8 | 26,761.6 | 7,476.2 | 17,611.7 | 364,350.0 | i192-dy-all-1 | 10.0.1.76 | 192.0 | 152.4 | c7i.48xlarge | us-west-2d | 3.0 | 192.0 | 2.0 | ont | sentdont.1-24 |
| ont.sentdont.1-24-Ods15x_HG006_sup-PAY77227_0. | Ods15x_HG006_sup-PAY77227_0. | ont.sentdont.1-24 | 1,710.6 | 0:28:30 | 38,990.1 | 50,223.1 | 38,997.2 | 39,002.4 | 32,709.4 | 4,349.7 | 16,070.1 | 230,807.8 | i192-dy-all-4 | 10.0.1.145 | 192.0 | 134.9 | c7i.48xlarge | us-west-2d | 3.0 | 192.0 | 1.4 | ont | sentdont.1-24 |
| ont.sentdont.concat.fofn-Ods5x_HG006_sup-PAY77227_0. | Ods5x_HG006_sup-PAY77227_0. | ont.sentdont.concat.fofn | 0.4 | 0:00:00 | 3.2 | 7.7 | 0.1 | 0.3 | 0.0 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | ont | sentdont.concat.fofn |
| ont.sentdont.concat.fofn-Ods10x_HG006_sup-PAY77227_0. | Ods10x_HG006_sup-PAY77227_0. | ont.sentdont.concat.fofn | 0.4 | 0:00:00 | 15.3 | 38.7 | 6.4 | 6.8 | 0.0 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | ont | sentdont.concat.fofn |
| ont.sentdont.concat.fofn-Ods15x_HG006_sup-PAY77227_0. | Ods15x_HG006_sup-PAY77227_0. | ont.sentdont.concat.fofn | 0.4 | 0:00:00 | 3.2 | 7.7 | 0.1 | 0.3 | 0.0 | 0.0 | 0.0 | 0.0 | ip-10-0-0-216 | 52.11.194.193 | 8.0 | 0.0 | r7i.2xlarge | us-west-2d | 0.2 | 1.0 | 0.0 | ont | sentdont.concat.fofn |
| ont.sentdont.concordance-Ods5x_HG006_sup-PAY77227_0. | Ods5x_HG006_sup-PAY77227_0. | ont.sentdont.concordance | 2,729.4 | 0:45:29 | 60,118.7 | 364,649.9 | 60,156.0 | 60,157.3 | 1,360.3 | 12,594.3 | 116.7 | 567.7 | i192-dy-all-1 | 10.0.1.73 | 192.0 | 0.2 | c7i.metal-48xl | us-west-2d | 2.6 | 96.0 | 1.0 | ont | sentdont.concordance |
| ont.sentdont.concordance-Ods10x_HG006_sup-PAY77227_0. | Ods10x_HG006_sup-PAY77227_0. | ont.sentdont.concordance | 2,698.8 | 0:44:58 | 90,369.3 | 359,201.0 | 90,422.0 | 90,423.1 | 3,226.6 | 11,518.6 | 128.6 | 549.0 | i192-dy-all-4 | 10.0.1.145 | 192.0 | 0.2 | c7i.48xlarge | us-west-2d | 3.0 | 96.0 | 1.1 | ont | sentdont.concordance |
| ont.sentdont.concordance-Ods15x_HG006_sup-PAY77227_0. | Ods15x_HG006_sup-PAY77227_0. | ont.sentdont.concordance | 2,512.4 | 0:41:52 | 102,426.2 | 359,201.0 | 102,467.8 | 102,468.9 | 3,079.7 | 10,998.7 | 126.7 | 616.7 | i192-dy-all-4 | 10.0.1.145 | 192.0 | 0.2 | c7i.48xlarge | us-west-2d | 3.0 | 96.0 | 1.0 | ont | sentdont.concordance |
| ont.sentdont.merge-Ods5x_HG006_sup-PAY77227_0. | Ods5x_HG006_sup-PAY77227_0. | ont.sentdont.merge | 67.1 | 0:01:07 | 79.1 | 13,418.8 | 82.4 | 82.8 | 0.0 | 494.7 | 142.8 | 103.2 | i192-dy-all-1 | 10.0.1.73 | 192.0 | 1.5 | c7i.metal-48xl | us-west-2d | 2.6 | 64.0 | 0.0 | ont | sentdont.merge |
| ont.sentdont.merge-Ods10x_HG006_sup-PAY77227_0. | Ods10x_HG006_sup-PAY77227_0. | ont.sentdont.merge | 41.9 | 0:00:41 | 78.9 | 12,139.0 | 82.2 | 82.7 | 6.0 | 201.5 | 84.5 | 39.3 | i192-dy-all-9 | 10.0.1.108 | 192.0 | 0.9 | c7i.metal-48xl | us-west-2d | 2.6 | 64.0 | 0.0 | ont | sentdont.merge |
| ont.sentdont.merge-Ods15x_HG006_sup-PAY77227_0. | Ods15x_HG006_sup-PAY77227_0. | ont.sentdont.merge | 30.7 | 0:00:30 | 78.8 | 12,523.0 | 83.2 | 83.4 | 6.0 | 238.4 | 144.6 | 46.2 | i192-dy-all-4 | 10.0.1.145 | 192.0 | 1.5 | c7i.48xlarge | us-west-2d | 3.0 | 64.0 | 0.0 | ont | sentdont.merge |